PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G08240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 424aa    MW: 46623.4 Da    PI: 8.7102
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G08240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.97e-2367132171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      rk+ksL+ll+++f++l+ + + +++ l+++ak+L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  LPERR06G08240.1  67 RKQKSLGLLCTNFVALYDRGDVEAIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWIG 132
                      79****************9999************...**..****************************98 PP

2E2F_TDP79.92.3e-25213293171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e     ++++k+RR+YDi+NVL++l+liek     ++k+++rw g
  LPERR06G08240.1 213 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEghaenNMRTKVRRLYDIANVLSSLKLIEKtqqadSRKPAFRWLG 293
                      79****************************************************************9999999******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-2563133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.64E-1666131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.7E-2867132IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.9E-2068132IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.0E-24210295IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-33213293IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.8E-21214293IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.94E-13215294IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAATAIPSSS AAPAADAPVH AEVAQLPAPP PRPAPYQPPR LAVDGAGGGA VAVVGGGKPC  60
RHHAYSRKQK SLGLLCTNFV ALYDRGDVEA IGLDDAAKRL GVERRRIYDI VNVLESVGIL  120
VRRAKNRYTW IGFGGVPAAL RELKERALRE VPVVGSPSLD ETSAANVSDD EDDDKFDDAD  180
GDAESEKLSL SQSIDNSSDK PDAAPCKLRS DHRKEKSLGL LTQNFVKLFL TMEIETISLD  240
EAAKRLLGEG HAENNMRTKV RRLYDIANVL SSLKLIEKTQ QADSRKPAFR WLGQPKKNEG  300
DSVTVAFAPT KMTLPSKRAF GTDLTNFDNK RGKLDSTMEN RGNLTLGNRS DFVYGPFHPA  360
GTRARKEHDN RKILEKDRKS IQDWENLASS FRPQYQNPAL NDLFGHYVEA WSSWYSDLKR  420
DAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-38662853228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200320.0AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643420.10.0PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-101E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A0D9WNU10.0A0A0D9WNU1_9ORYZ; Uncharacterized protein
STRINGORGLA06G0087600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-102DP-E2F-like 1